Basic Information
Locus ID:
Oco03G006080
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 5798796 | 5802663 | - | Oco03G006080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 111,225.62 Da | 37.11 | 95.70 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 686 | 962 | 1.4384E-85 | - |
| Pfam | PF00069 | Protein kinase domain | 681 | 895 | 3.3E-41 | IPR000719 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 497 | 532 | 5.8E-7 | IPR025875 |
| Pfam | PF13516 | Leucine Rich repeat | 564 | 581 | 0.51 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 286 | 345 | 2.3E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 89 | 127 | 6.5E-7 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 664 | 962 | 8.09E-71 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 53 | 371 | 5.44E-59 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 326 | 588 | 2.51E-39 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 663 | 762 | 3.6E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 184 | 2.0E-37 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 185 | 541 | 4.1E-95 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 763 | 980 | 5.5E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 542 | 612 | 2.1E-11 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 542 | 565 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 332 | 356 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 495 | 518 | 25.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 237 | 261 | 41.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 286 | 308 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 114 | 138 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 519 | 541 | 70.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 680 | 963 | 1.2E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 680 | 964 | 36.979504 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 286 | 309 | 7.450131 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 521 | 543 | 7.00349 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 116 | 138 | 7.619546 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 686 | 712 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 813 | 825 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 117 | 130 | 8.9E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 237 | 250 | 8.9E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 982 | 1023 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_015626128.1 | receptor-like protein kinase 5 [Oryza sativa Japonica Group] | 0 |
| P47735 | Receptor-like protein kinase 5 OS=Arabidopsis thaliana OX=3702 GN=RLK5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1FB93 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_023470 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology