Basic Information
Locus ID:
Oco03G005850
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Pyridoxal-phosphate dependent enzyme
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 5468691 | 5471671 | + | Oco03G005850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 16,660.11 Da | 24.03 | 103.18 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | 2 | 136 | 1.5E-26 | IPR001926 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 1 | 152 | 2.1E-37 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 1 | 69 | 4.6E-50 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 70 | 154 | 4.6E-50 | IPR036052 |
KEGG Pathway
Pathway:
ko00270 (Cysteine and methionine metabolism)
map00270 (Cysteine and methionine metabolism)
ko00920 (Sulfur metabolism)
map00920 (Sulfur metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43750.1 | O-acetylserine (thiol) lyase B. Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasB, the key enzyme for fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. | 0 |
| RefSeq | XP_015626082.1 | cysteine synthase-like isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q00834 | Cysteine synthase OS=Spinacia oleracea OX=3562 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0CI47 | PALP domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology