Basic Information
Locus ID:
Oco03G005810
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Domain of unknown function (DUF4283)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 5438474 | 5445508 | + | Oco03G005810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 110,765.84 Da | 46.08 | 77.64 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 633 | 827 | 3.38678E-104 | - |
| CDD | cd18787 | SF2_C_DEAD | 840 | 968 | 5.88465E-32 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 676 | 812 | 1.1E-19 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 853 | 961 | 9.9E-14 | IPR001650 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 92 | 233 | 1.7E-22 | IPR025558 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 696 | 976 | 2.11E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 833 | 998 | 3.9E-37 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 613 | 830 | 2.4E-42 | IPR027417 |
| SMART | SM00487 | ultradead3 | 648 | 841 | 4.8E-20 | IPR014001 |
| SMART | SM00490 | helicmild6 | 880 | 962 | 1.9E-9 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 660 | 827 | 16.771334 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 839 | 998 | 15.597877 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 774 | 782 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 569 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 559 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_052143863.1 | ATP-dependent RNA helicase DRS1-like [Oryza glaberrima] | 0 |
| Q0E2Q3 | Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0221300 PE=3 SV=2 | 0 | |
| TrEMBL | A0A0E0JYU9 | DUF4283 domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology