Basic Information
Locus ID:
Oco03G005800
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Domain of unknown function (DUF4283)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 5418716 | 5422479 | + | Oco03G005800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 84,887.27 Da | 43.39 | 86.00 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00270 | DEAD/DEAH box helicase | 526 | 616 | 2.0E-14 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 667 | 722 | 4.0E-7 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 518 | 745 | 6.55E-32 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 631 | 767 | 2.7E-18 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 530 | 630 | 8.9E-22 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 431 | 529 | 8.6E-8 | IPR027417 |
| SMART | SM00487 | ultradead3 | 470 | 641 | 7.2E-8 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 497 | 631 | 13.457874 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 578 | 586 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 367 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_015622546.1 | ATP-dependent RNA helicase DRS1 isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q0E2Q3 | Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0221300 PE=3 SV=2 | 0 | |
| TrEMBL | A0A0E0JYU9 | DUF4283 domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology