Basic Information
Locus ID:
Oco03G005530
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 5023056 | 5024554 | - | Oco03G005530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 23,810.02 Da | 69.08 | 78.62 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13964 | Kelch motif | 116 | 165 | 3.3E-6 | - |
| Pfam | PF00646 | F-box domain | 8 | 39 | 4.9E-5 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 84 | 176 | 4.84E-13 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 53 | 6.54E-6 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 72 | 196 | 5.9E-14 | IPR015915 |
| SMART | SM00612 | kelc_smart | 127 | 175 | 2.1E-6 | IPR006652 |
| SMART | SM00256 | fbox_2 | 10 | 49 | 0.0079 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80440.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_052144780.1 | F-box/kelch-repeat protein At1g80440-like [Oryza glaberrima] | 0 |
| Q9M8L2 | F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0JX70 | F-box domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology