halophFGD

Basic Information

Locus ID: Oco03G005440

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: WD domain, G-beta repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG03	4899814	4901066	+	Oco03G005440

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.76	13,716.39 Da	43.14	70.56	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	41	83	2.2E-7	IPR036322
Gene3D	G3DSA:2.130.10.10	-	17	104	2.8E-12	IPR015943
SMART	SM00320	WD40_4	42	82	1.1E-4	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	50	83	10.996502	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	50	83	13.248743	IPR001680
MobiDBLite	mobidb-lite	consensus disorder prediction	82	107	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	89	103	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K13137 (serine-threonine kinase receptor-associated protein)

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G15610.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_052143472.1	uncharacterized protein LOC127762967 [Oryza glaberrima]
Swiss-Prot	Q5E959	Serine-threonine kinase receptor-associated protein OS=Bos taurus OX=9913 GN=STRAP PE=2 SV=1
TrEMBL	A6N008	Serine-threonine kinase receptor-associated protein (Fragment) OS=Oryza sativa subsp. indica OX=39946 PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	1	AgUnG00168
Brassicaceae	Brassica nigra	1	BniB05g024780.2N
Poaceae	Oryza coarctata	1	Oco03G005440