Basic Information
Locus ID:
Oco03G005170
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 4521753 | 4524334 | - | Oco03G005170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 74,828.14 Da | 41.55 | 92.61 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 247 | 290 | 3.80168E-7 | IPR018392 |
| Pfam | PF01476 | LysM domain | 248 | 291 | 1.3E-6 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 451 | 690 | 1.2E-31 | IPR000719 |
| SUPERFAMILY | SSF54106 | LysM domain | 246 | 291 | 6.67E-6 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 432 | 693 | 3.03E-53 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 244 | 300 | 1.9E-9 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 395 | 487 | 1.9E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 488 | 709 | 1.1E-47 | - |
| SMART | SM00257 | LysM_2 | 178 | 227 | 2.5 | IPR018392 |
| SMART | SM00257 | LysM_2 | 247 | 291 | 2.4E-6 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 246 | 290 | 11.795186 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 363 | 702 | 29.446081 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_015623069.1 | protein LYK5 [Oryza sativa Japonica Group] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1FFG0 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_035746 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology