Basic Information
Locus ID:
Oco03G005050
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 4404393 | 4410198 | - | Oco03G005050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 82,363.37 Da | 47.45 | 88.62 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 99 | 113 | 0.4 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 429 | 697 | 2.8E-30 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 145 | 203 | 9.0E-11 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 64 | 241 | 4.28E-32 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 410 | 701 | 2.81E-57 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 386 | 503 | 1.4E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 504 | 718 | 5.5E-44 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 260 | 3.9E-43 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 145 | 166 | 7.76586 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 426 | 703 | 29.375412 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 432 | 455 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 300 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_015626778.1 | protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1FFS4 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_035764 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology