Basic Information
Locus ID:
Oco03G004650
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
EBF1
Description:
Leucine-rich repeat - CC (cysteine-containing) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 4076493 | 4079712 | + | Oco03G004650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 69,568.20 Da | 45.62 | 105.53 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 284 | 306 | 0.024 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 232 | 255 | 0.072 | IPR001611 |
| Pfam | PF00646 | F-box domain | 69 | 109 | 6.6E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 62 | 106 | 1.44E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 154 | 455 | 2.12E-29 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 355 | 619 | 4.12E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 464 | 659 | 6.1E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 272 | 463 | 2.1E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 155 | 271 | 7.2E-23 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 627 | 652 | 470.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 575 | 599 | 0.078 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 601 | 626 | 140.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 389 | 414 | 0.79 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 522 | 547 | 0.75 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 177 | 205 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 495 | 520 | 0.17 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 415 | 440 | 49.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 549 | 574 | 0.0089 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 363 | 388 | 55.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 206 | 231 | 1.3 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 232 | 257 | 7.5E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 258 | 283 | 0.15 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 284 | 309 | 0.011 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 469 | 494 | 520.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_044950676.1 | EIN3-binding F-box protein 1-like [Hordeum vulgare subsp. vulgare] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0JWZ8 | F-box domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology