Basic Information
Locus ID:
Oco03G004160
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 3554637 | 3563081 | + | Oco03G004160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 30,800.65 Da | 54.62 | 67.05 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 1 | 147 | 1.7E-69 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 1 | 70 | 2.5E-30 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 72 | 145 | 4.7E-35 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 267 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_052145389.1 | uncharacterized protein LOC127764539 [Oryza glaberrima] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0E0CGQ9 | Ubiquitin fusion degradation protein 1 homolog OS=Oryza meridionalis OX=40149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology