Basic Information
Locus ID:
Oco03G004010
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 3401946 | 3409654 | + | Oco03G004010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 39,398.43 Da | 50.26 | 77.92 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 3.96246E-28 | - |
| Pfam | PF00627 | UBA/TS-N domain | 317 | 353 | 1.2E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 140 | 176 | 5.3E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.2E-15 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 236 | 291 | 4.1E-22 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 299 | 359 | 2.28E-14 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 89 | 3.91E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 121 | 180 | 1.2E-10 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 232 | 299 | 4.58E-23 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 309 | 359 | 6.1E-23 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 227 | 291 | 1.5E-27 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 7.3E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 131 | 181 | 1.1E-19 | - |
| SMART | SM00165 | uba_6 | 138 | 178 | 8.6E-7 | IPR015940 |
| SMART | SM00727 | CBM | 234 | 277 | 1.8E-4 | IPR006636 |
| SMART | SM00165 | uba_6 | 318 | 355 | 4.8E-9 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 3.8E-20 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 361 | 9.5E-116 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 137 | 179 | 12.811962 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.432085 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 316 | 356 | 14.763827 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 329 | 343 | 7.2E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 262 | 284 | 7.2E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 344 | 359 | 7.2E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 312 | 328 | 7.2E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 105 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_015622750.1 | ubiquitin receptor RAD23b isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | J3LA63 | Ubiquitin receptor RAD23 OS=Oryza brachyantha OX=4533 GN=102711591 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology