Basic Information
Locus ID:
Oco03G003140
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 2613601 | 2618194 | - | Oco03G003140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 35,864.74 Da | 61.52 | 70.24 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 237 | 285 | 5.32968E-16 | - |
| Pfam | PF12906 | RING-variant domain | 237 | 284 | 2.6E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 233 | 288 | 1.02E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 225 | 292 | 4.3E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 236 | 285 | 2.0E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 229 | 291 | 19.505527 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 37 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015625708.1 | uncharacterized protein LOC4328407 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A6G1FG35 | RING-CH-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_036369 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology