Basic Information
Locus ID:
Oco03G002060
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Protein tyrosine kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 1613674 | 1616980 | + | Oco03G002060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 73,762.53 Da | 48.12 | 92.56 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 101 | 157 | 7.2E-10 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 72 | 2.0E-5 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 386 | 661 | 1.9E-24 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 32 | 193 | 1.53E-26 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 350 | 661 | 2.02E-43 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 453 | 677 | 4.1E-38 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 203 | 9.3E-32 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 336 | 450 | 3.6E-18 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 375 | 670 | 25.403757 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 232 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03390.1 | STRUBBELIG-receptor family 3. | 0 |
| RefSeq | XP_052144909.1 | protein STRUBBELIG-RECEPTOR FAMILY 1-like [Oryza glaberrima] | 0 |
| Q6R2K3 | Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana OX=3702 GN=SRF3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3F0F2 | Protein kinase domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.321, BH07.417, CH03.4499 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0101050, gene-QOZ80_2BG0154450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0555950.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020170 |
| Poaceae | Oryza coarctata | 1 | Oco03G002060 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g04430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G032300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201479, Pt_Chr0201528 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G233400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG013450, gene_TRIDC6BG018900 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G103900.1, TraesCS6B02G133000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb231730_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33773 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12164 |