Basic Information
Locus ID:
Oco03G002020
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the WD repeat SEC13 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 1579613 | 1581890 | + | Oco03G002020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 33,380.99 Da | 33.80 | 76.72 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 244 | 0.0084 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 145 | 195 | 0.0058 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 8 | 37 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 46 | 85 | 1.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 96 | 132 | 0.014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 290 | 1.14E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 305 | 7.1E-102 | IPR015943 |
| SMART | SM00320 | WD40_4 | 251 | 290 | 0.89 | IPR001680 |
| SMART | SM00320 | WD40_4 | 139 | 195 | 0.023 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 245 | 3.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 92 | 133 | 3.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 44 | 85 | 6.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 39 | 0.42 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 51 | 85 | 8.781968 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 209 | 244 | 9.177421 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 51 | 85 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 209 | 244 | 10.942887 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 182 | 196 | 8.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 232 | 246 | 8.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 72 | 86 | 8.9E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01340.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_015622606.1 | protein transport protein SEC13 homolog B [Oryza sativa Japonica Group] | 0 |
| Q9SRI1 | Protein transport protein SEC13 homolog A OS=Arabidopsis thaliana OX=3702 GN=SEC13A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0JV94 | WD_REPEATS_REGION domain-containing protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19813, jg25303, jg40321 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10603 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010982, Ah014283 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g193600 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg11312, Sbi_jg46272, Sbi_jg9402 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19210, Seu_jg20610 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005363 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl41952, Sgl46743, Sgl55846, Sgl61055 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000011262, gene:ENSEOMG00000031498 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.8AG0022550, CQ.Regalona.r1.8BG0019910 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30201420 |
| Apiaceae | Apium graveolens | 3 | Ag3G00828, Ag4G00821, Ag6G01850 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G001420, COCNU_01G005350, scaffold015856G000030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707340, gene-LOC103710412 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2553.V1.1, AsparagusV1_01.362.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G15093, Ftri16G05199 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G30050.1, AT3G01340.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10016789m.g.v1.0, Thhalv10021223m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g00730.v2.2, Sp4g12610.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g014050.2N, BniB01g060590.2N, BniB06g019140.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0338 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0353 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g12450 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0081s00032.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g24930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8284 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG01.299, evm.TU.LG03.1642, evm.TU.LG05.447 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023392, Pov_00027915 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03791, Lb1G03818 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.194, AH03.711, BH03.2323, BH03.839, CH03.2398 |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0001810, gene-QOZ80_1BG0050370 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0200730.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005494, gene-QYE76_051327, gene-QYE76_060523 |
| Poaceae | Oryza coarctata | 7 | Oco02G005140, Oco03G002020, Oco05G028060, Oco06G029060 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g04320.1, LOC_Os03g61630.2, LOC_Os07g14280.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G197000, gene-BS78_03G017700 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702017, Pt_Chr0702079 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G012920, Chr02G028370, Chr10G009040, Chr14G014770 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel1E01G092500, Tel1E01G094000, Tel2E01G832500 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG005100, gene_TRIDC1BG007100 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS1A02G044200.1.cds1, TraesCS1B02G057100.1.cds1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb096990_P001, Zm00001eb119930_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-26557, nbis-gene-32652 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g32619, Zma_g4972, Zma_g6227, Zma_g7234 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1223, evm.TU.LG22.133 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g18480, gene.Posoc05g22310 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.1300, evm.TU.Scaffold_6_RagTag.210 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-15031, nbisL1-mrna-7029 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2716, nbisL1-mrna-672 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-173, nbisL1-mrna-8818 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000011l.49, add.evm.TU.utg000033l.175 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007097, Maker00014631 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-21478, nbisL1-mrna-23423 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-17401, nbisL1-mrna-17969, nbisL1-mrna-24355 |
| Salicaceae | Populus euphratica | 3 | populus_peu07273, populus_peu21269, populus_peu28563 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616801, gene-LOC132621217, gene-LOC132633408 |
| Solanaceae | Solanum chilense | 2 | SOLCI002165600, SOLCI006331400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107011415, gene-LOC107012826 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.12217_chr02_-, gene_13816 |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G1938, TC10G1208 |
| Zosteraceae | Zostera marina | 2 | Zosma02g03380.v3.1, Zosma02g24670.v3.1 |