Basic Information
Locus ID:
Oco03G001810
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 1373089 | 1379152 | + | Oco03G001810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 23,958.21 Da | 43.91 | 91.04 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 85 | 133 | 4.4149E-16 | - |
| Pfam | PF12906 | RING-variant domain | 85 | 132 | 1.7E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 83 | 136 | 7.06E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 144 | 1.0E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 84 | 133 | 8.9E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 77 | 139 | 19.327078 | IPR011016 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.4 | - | 0 |
| RefSeq | XP_015626845.1 | E3 ubiquitin-protein ligase MARCH2 isoform X4 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | Q6ZG80 | Os02g0132300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0132300 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology