halophFGD

Basic Information

Locus ID: Oco03G001780

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: vesicle-mediated transport

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG03	1358540	1359578	-	Oco03G001780

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.18	14,197.48 Da	26.49	80.46	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	65	100	0.069	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	9	125	2.56E-10	IPR036322
Gene3D	G3DSA:2.130.10.10	-	3	122	8.2E-10	IPR015943
SMART	SM00320	WD40_4	63	102	0.0021	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14005 (protein transport protein SEC31)

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description	E-value

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Asteraceae	Flaveria trinervia	1	Ftri15G06539
Poaceae	Echinochloa crus-galli	1	CH03.4557
Poaceae	Lolium multiflorum	1	gene-QYE76_020038
Poaceae	Oryza coarctata	1	Oco03G001780
Poaceae	Oryza sativa	1	LOC_Os02g03990.1
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0201384, Pt_Chr0201412, Pt_Chr0201414, Pt_Chr0305667
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-19408