halophFGD

Basic Information

Locus ID: Oco03G000460

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: A domain family that is part of the cupin metalloenzyme superfamily.

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG03	432667	441722	-	Oco03G000460

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.41	110,674.25 Da	54.14	65.40	-0.82

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF10497	Zinc-finger domain of monoamine-oxidase A repressor R1	97	166	5.2E-5	IPR018866
Pfam	PF02373	JmjC domain, hydroxylase	799	901	1.1E-14	IPR003347
SUPERFAMILY	SSF51197	Clavaminate synthase-like	426	941	1.92E-35	-
Gene3D	G3DSA:2.60.120.650	Cupin	413	662	5.7E-84	-
Gene3D	G3DSA:2.60.120.650	Cupin	736	927	3.6E-67	-
SMART	SM00558	cupin_9	529	918	3.2E-73	IPR003347
ProSiteProfiles	PS51184	JmjC domain profile.	548	918	25.014383	IPR003347
MobiDBLite	mobidb-lite	consensus disorder prediction	648	671	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	94	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	952	981	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	13	36	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	78	92	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	648	669	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	748	777	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	754	768	-	-
Coils	Coil	Coil	608	628	-	-

KEGG Pathway

KO Term:

K15601 ([histone H3]-dimethyl-L-lysine9 demethylase [EC:1.14.11.65])

Best hit

Source	Best Hit ID	Description
TAIR	AT4G00990.1	Transcription factor jumonji (jmjC) domain-containing protein.
RefSeq	XP_015623118.1	lysine-specific demethylase JMJ25 [Oryza sativa Japonica Group]
Swiss-Prot	Q8VYB9	Lysine-specific demethylase JMJ27 OS=Arabidopsis thaliana OX=3702 GN=JMJ27 PE=1 SV=1
TrEMBL	A0A0E0I6X8	JmjC domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg13878, jg20453, jg24873, jg30979, jg38643, jg39734
Aizoaceae	Mesembryanthemum crystallinum	6	gene_11988, gene_19599, gene_20504, gene_22003, gene_22180 ... gene_3319
Amaranthaceae	Atriplex hortensis	8	Ah000992, Ah005768, Ah017464, Ah017845, Ah018611, Ah038539 ... Ah038543, Ah038544
Amaranthaceae	Beta vulgaris	10	BVRB_3g051890, BVRB_4g081190, BVRB_5g115270, BVRB_8g181330 ... BVRB_8g185630, BVRB_8g185640, BVRB_9g202810, BVRB_9g202820, BVRB_9g202830, BVRB_9g208760
Amaranthaceae	Salicornia bigelovii	19	Sbi_jg14700, Sbi_jg17106, Sbi_jg26440, Sbi_jg29002 ... Sbi_jg29004, Sbi_jg39350, Sbi_jg39371, Sbi_jg40040, Sbi_jg40042, Sbi_jg40201, Sbi_jg44430, Sbi_jg47868, Sbi_jg50177, Sbi_jg54987, Sbi_jg55000, Sbi_jg55469, Sbi_jg59908, Sbi_jg61654, Sbi_jg62835
Amaranthaceae	Salicornia europaea	12	Seu_jg14291, Seu_jg14292, Seu_jg14294, Seu_jg14966 ... Seu_jg14986, Seu_jg1782, Seu_jg22117, Seu_jg24005, Seu_jg26027, Seu_jg370, Seu_jg6922, Seu_jg6923
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00005630, GOSA_00011372, GOSA_00012511, GOSA_00012512 ... GOSA_00015318, GOSA_00020081, GOSA_00023799
Amaranthaceae	Suaeda glauca	17	Sgl01324, Sgl06408, Sgl31271, Sgl36615, Sgl41591, Sgl45716 ... Sgl46379, Sgl50471, Sgl56133, Sgl56134, Sgl61701, Sgl78073, Sgl78074, Sgl78075, Sgl80581, Sgl80582, Sgl80583
Amaranthaceae	Chenopodium album	27	gene:ENSEOMG00000004497, gene:ENSEOMG00000007039 ... gene:ENSEOMG00000009457, gene:ENSEOMG00000009679, gene:ENSEOMG00000010096, gene:ENSEOMG00000011997, gene:ENSEOMG00000014955, gene:ENSEOMG00000016575, gene:ENSEOMG00000017796, gene:ENSEOMG00000020665, gene:ENSEOMG00000026315, gene:ENSEOMG00000028428, gene:ENSEOMG00000029753, gene:ENSEOMG00000031590, gene:ENSEOMG00000032792, gene:ENSEOMG00000038337, gene:ENSEOMG00000039300, gene:ENSEOMG00000040417, gene:ENSEOMG00000040503, gene:ENSEOMG00000042368, gene:ENSEOMG00000044680, gene:ENSEOMG00000045089, gene:ENSEOMG00000045805, gene:ENSEOMG00000048443, gene:ENSEOMG00000051076, gene:ENSEOMG00000052371, gene:ENSEOMG00000052654
Amaranthaceae	Chenopodium quinoa	16	CQ.Regalona.r1.3AG0005190, CQ.Regalona.r1.3BG0005260 ... CQ.Regalona.r1.4AG0008360, CQ.Regalona.r1.4BG0008490, CQ.Regalona.r1.5AG0021400, CQ.Regalona.r1.5BG0022750, CQ.Regalona.r1.8AG0001340, CQ.Regalona.r1.8AG0003740, CQ.Regalona.r1.8BG0001260, CQ.Regalona.r1.8BG0003850, CQ.Regalona.r1.9AG0000830, CQ.Regalona.r1.9AG0000850, CQ.Regalona.r1.9AG0000870, CQ.Regalona.r1.9AG0000880, CQ.Regalona.r1.9BG0021500, CQ.Regalona.r1.9BG0021520
Anacardiaceae	Pistacia vera	13	pistato.v30006270, pistato.v30068660, pistato.v30073640 ... pistato.v30075170, pistato.v30083790, pistato.v30094670, pistato.v30131780, pistato.v30165040, pistato.v30223040, pistato.v30223050, pistato.v30224990, pistato.v30288220, pistato.v30288230
Apiaceae	Apium graveolens	22	Ag11G04310, Ag11G04463, Ag1G00529, Ag1G01205, Ag2G00723 ... Ag2G00727, Ag3G01537, Ag3G02034, Ag4G01201, Ag4G01330, Ag5G01314, Ag5G01728, Ag6G02722, Ag6G02723, Ag7G00662, Ag7G00689, Ag7G01034, Ag7G01038, Ag8G00999, Ag8G01204, AgUnG00379, AgUnG01468
Arecaceae	Cocos nucifera	4	COCNU_01G009990, COCNU_04G009700, COCNU_08G009770 ... COCNU_09G006650
Arecaceae	Phoenix dactylifera	2	gene-LOC103716776, gene-LOC103722119
Asparagaceae	Asparagus officinalis	7	AsparagusV1_01.1761.V1.1, AsparagusV1_01.1762.V1.1 ... AsparagusV1_05.2001.V1.1, AsparagusV1_06.1648.V1.1, AsparagusV1_08.1831.V1.1, AsparagusV1_08.1832.V1.1, AsparagusV1_Unassigned.961.V1.1
Asteraceae	Flaveria trinervia	13	Ftri11G19228, Ftri12G28799, Ftri13G29895, Ftri15G20400 ... Ftri18G33599, Ftri4G08157, Ftri5G08862, Ftri5G15420, Ftri5G19348, Ftri5G25792, FtriNA16041, FtriNA20998, FtriNA21434
Brassicaceae	Arabidopsis thaliana	6	AT1G09060.3, AT1G11950.1, AT1G62310.1, AT3G07610.3 ... AT4G00990.1, AT4G21430.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10006723m.g.v1.0, Thhalv10006772m.g.v1.0 ... Thhalv10020080m.g.v1.0, Thhalv10023846m.g.v1.0, Thhalv10024332m.g.v1.0, Thhalv10028389m.g.v1.0, Thhalv10029199m.g.v1.0
Brassicaceae	Schrenkiella parvula	7	Sp1g07660.v2.2, Sp1g10640.v2.2, Sp2g02310.v2.2 ... Sp2g06730.v2.2, Sp3g06550.v2.2, Sp6g01160.v2.2, Sp7g19550.v2.2
Brassicaceae	Brassica nigra	17	BniB01g056320.2N, BniB02g059000.2N, BniB02g070720.2N ... BniB03g003070.2N, BniB03g004820.2N, BniB04g021200.2N, BniB04g039980.2N, BniB05g014650.2N, BniB05g014660.2N, BniB05g015690.2N, BniB05g053980.2N, BniB05g053990.2N, BniB05g058880.2N, BniB08g041200.2N, BniB08g043370.2N, BniB08g043410.2N, BniB08g049370.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G1485, Ceq08G1641, Ceq09G1623
Casuarinaceae	Casuarina glauca	4	Cgl04G1648, Cgl04G1825, Cgl06G1240, Cgl08G1681
Cymodoceaceae	Cymodocea nodosa	5	gene.Cymno03g13140, gene.Cymno05g07960, gene.Cymno05g12740 ... gene.Cymno12g03350, gene.Cymno18g04870
Dunaliellaceae	Dunaliella salina	1	Dusal.0055s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g06040, gene.Thate03g26030, gene.Thate05g12620 ... gene.Thate06g06640, gene.Thate09g08010
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-11692
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.2868, evm.TU.LG02.2016, evm.TU.LG03.2456 ... evm.TU.LG05.1126, evm.TU.LG12.1055, evm.TU.LG12.1174
Plantaginaceae	Plantago ovata	19	Pov_00000577, Pov_00000836, Pov_00005720, Pov_00005800 ... Pov_00005975, Pov_00008813, Pov_00013315, Pov_00013979, Pov_00014065, Pov_00014078, Pov_00014079, Pov_00014082, Pov_00014083, Pov_00014084, Pov_00018488, Pov_00019689, Pov_00019691, Pov_00019696, Pov_00022449
Plumbaginaceae	Limonium bicolor	8	Lb0G37225, Lb1G02885, Lb1G04170, Lb2G14462, Lb3G20676 ... Lb7G33757, Lb7G33759, Lb7G34617
Poaceae	Echinochloa crus-galli	15	AH01.1077, AH01.3657, AH07.146, AH07.4027, BH01.1619 ... BH01.4004, BH03.1957, BH07.3840, BH07.57, CH01.1695, CH01.4277, CH03.2165, CH03.4773, CH07.3906, CH08.2145
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2AG0098900, gene-QOZ80_2AG0151450 ... gene-QOZ80_2BG0152360, gene-QOZ80_2BG0206820, gene-QOZ80_3AG0225890, gene-QOZ80_3AG0247920, gene-QOZ80_4AG0314440, gene-QOZ80_6AG0534350, gene-QOZ80_6BG0487430
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0024370.1, HORVU.MOREX.r3.4HG0375930.2 ... HORVU.MOREX.r3.5HG0478600.1, HORVU.MOREX.r3.6HG0542720.1
Poaceae	Lolium multiflorum	5	gene-QYE76_004948, gene-QYE76_019413, gene-QYE76_065165 ... gene-QYE76_067279, gene-QYE76_067882
Poaceae	Oryza coarctata	8	Oco03G000460, Oco04G000450, Oco04G026540, Oco05G013370 ... Oco06G013040, Oco06G017110, Oco17G004180, Oco18G004120
Poaceae	Oryza sativa	6	LOC_Os02g01940.1, LOC_Os02g58210.1, LOC_Os03g22540.1 ... LOC_Os03g31594.1, LOC_Os09g22040.1, LOC_Os09g22540.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G161000, gene-BS78_01G356300 ... gene-BS78_02G174100, gene-BS78_04G007200, gene-BS78_04G328200
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0102712, Pt_Chr0108151, Pt_Chr0207427, Pt_Chr0303636 ... Pt_Chr0401123
Poaceae	Sporobolus alterniflorus	14	Chr01G034430, Chr04G011160, Chr04G014320, Chr07G022840 ... Chr0G010380, Chr0G010390, Chr10G010710, Chr12G005150, Chr14G013370, Chr14G013380, Chr15G000180, Chr15G027100, Chr21G012510, Chr24G007120
Poaceae	Thinopyrum elongatum	5	Tel4E01G247600, Tel5E01G049600, Tel5E01G049700 ... Tel5E01G337600, Tel6E01G077000
Poaceae	Triticum dicoccoides	9	gene_TRIDC1AG015340, gene_TRIDC1BG018610 ... gene_TRIDC3BG080580, gene_TRIDC4AG019830, gene_TRIDC4BG029410, gene_TRIDC5AG032590, gene_TRIDC5BG034430, gene_TRIDC6AG003070, gene_TRIDC6BG004380
Poaceae	Triticum aestivum	14	TraesCS1A02G107000.1, TraesCS1B02G124400.1 ... TraesCS1D02G107800.1, TraesCS3B02G557600.1, TraesCS4A02G139300.7, TraesCS4B02G154300.1, TraesCS4D02G165700.3, TraesCS5A02G202300.1, TraesCS5B02G200900.1, TraesCS5D02G024900.1, TraesCS5D02G208700.2, TraesCS6A02G026500.2, TraesCS6B02G036900.2, TraesCS6D02G030300.2
Poaceae	Zea mays	5	Zm00001eb049830_P003, Zm00001eb190750_P001 ... Zm00001eb209780_P001, Zm00001eb311870_P002, Zm00001eb394830_P003
Poaceae	Zoysia japonica	3	nbis-gene-1612, nbis-gene-20232, nbis-gene-38548
Poaceae	Zoysia macrostachya	4	Zma_g1226, Zma_g23896, Zma_g32457, Zma_g3313
Portulacaceae	Portulaca oleracea	12	evm.TU.LG01.1919, evm.TU.LG02.842, evm.TU.LG05.1324 ... evm.TU.LG09.2015, evm.TU.LG11.115, evm.TU.LG11.1676, evm.TU.LG14.1101, evm.TU.LG16.1375, evm.TU.LG18.1239, evm.TU.LG20.1161, evm.TU.LG20.643, evm.TU.LG21.1015
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g27010, gene.Posoc02g32060, gene.Posoc04g11580 ... gene.Posoc07g02160, gene.Posoc09g05020
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_12_RagTag.1022, evm.TU.Scaffold_13_RagTag.28 ... evm.TU.Scaffold_12_RagTag.928, evm.TU.Scaffold_15_RagTag.461, evm.TU.Scaffold_1_RagTag.133, evm.TU.Scaffold_2_RagTag.2056
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-23338, nbisL1-mrna-23847, nbisL1-mrna-23971 ... nbisL1-mrna-26641, nbisL1-mrna-29593, nbisL1-mrna-8133
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-12447, nbisL1-mrna-14210, nbisL1-mrna-17752 ... nbisL1-mrna-4240, nbisL1-mrna-5121, nbisL1-mrna-5454, nbisL1-mrna-573
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-15872, nbisL1-mrna-20756, nbisL1-mrna-20757 ... nbisL1-mrna-21646, nbisL1-mrna-21720, nbisL1-mrna-5214
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000001l.241, evm.TU.utg000009l.59 ... evm.TU.utg000012l.98, evm.TU.utg000015l.21, evm.TU.utg000015l.96, evm.TU.utg000027l.21, evm.TU.utg000027l.75
Rhizophoraceae	Kandelia obovata	5	Maker00002465, Maker00005779, Maker00011207, Maker00015410 ... Maker00017434
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-10669, nbisL1-mrna-10718, nbisL1-mrna-13847 ... nbisL1-mrna-19145, nbisL1-mrna-21975, nbisL1-mrna-6070, nbisL1-mrna-7862
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-124, nbisL1-mrna-16154, nbisL1-mrna-16949 ... nbisL1-mrna-23295, nbisL1-mrna-23410, nbisL1-mrna-23892, nbisL1-mrna-2547
Salicaceae	Populus euphratica	10	populus_peu10176, populus_peu10177, populus_peu10393 ... populus_peu13380, populus_peu13842, populus_peu13923, populus_peu15711, populus_peu18285, populus_peu18445, populus_peu28020
Solanaceae	Lycium barbarum	12	gene-LOC132608944, gene-LOC132609486, gene-LOC132609487 ... gene-LOC132616094, gene-LOC132621918, gene-LOC132622182, gene-LOC132622598, gene-LOC132623452, gene-LOC132623453, gene-LOC132632087, gene-LOC132638227, gene-LOC132639227
Solanaceae	Solanum chilense	8	SOLCI001436700, SOLCI001436800, SOLCI003381300 ... SOLCI004632500, SOLCI005011300, SOLCI005573200, SOLCI006121300, SOLCI007164900
Solanaceae	Solanum pennellii	8	gene-LOC107008917, gene-LOC107010511, gene-LOC107010872 ... gene-LOC107011550, gene-LOC107014353, gene-LOC107017980, gene-LOC107028610, gene-LOC107030481
Tamaricaceae	Reaumuria soongarica	7	STRG.15485_chr06_+, STRG.21827_chr08_-, gene_16646, gene_422 ... gene_17070, gene_17479, gene_722
Tamaricaceae	Tamarix chinensis	7	TC01G3497, TC02G1481, TC03G1982, TC05G2010, TC07G1623 ... TC07G2584, TC09G1538
Zosteraceae	Zostera marina	6	Zosma01g29240.v3.1, Zosma04g12150.v3.1, Zosma06g02060.v3.1 ... Zosma108g00010.v3.1, Zosma135g00010.v3.1, Zosma388g00010.v3.1