Basic Information
Locus ID:
Oco03G000240
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 239620 | 245381 | + | Oco03G000240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 28,167.86 Da | 56.81 | 82.25 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 37 | 102 | 2.16077E-35 | IPR033896 |
| Pfam | PF01486 | K-box region | 112 | 198 | 1.5E-23 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 36 | 83 | 7.3E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 29 | 104 | 9.42E-30 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 39 | 118 | 1.8E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 27 | 86 | 1.8E-35 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 27 | 87 | 29.716402 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 114 | 204 | 13.20214 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 29 | 83 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 29 | 49 | 2.8E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 64 | 85 | 2.8E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 49 | 64 | 2.8E-28 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| Coils | Coil | Coil | 151 | 171 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45660.2 | - | 0 |
| RefSeq | XP_015625203.1 | MADS-box protein SOC1 isoform X2 [Oryza sativa Japonica Group] | 0 |
| O64645 | MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1C609 | MADS-box transcription factor OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_012424 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology