Basic Information
Locus ID:
Oco03G000070
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 118058 | 127179 | - | Oco03G000070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 192,679.05 Da | 49.81 | 86.87 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1347 | 1773 | 3.94559E-118 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1394 | 1778 | 5.3E-80 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1340 | 1771 | 3.4E-94 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 79 | 550 | 1.02E-37 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1287 | 1544 | 9.7E-42 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 69 | 372 | 3.3E-48 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1652 | 1776 | 6.3E-31 | - |
| SMART | SM00119 | hect_3 | 1361 | 1778 | 4.7E-78 | IPR000569 |
| SMART | SM00185 | arm_5 | 243 | 281 | 17.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 200 | 240 | 43.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 111 | 158 | 6.7 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1387 | 1778 | 55.544811 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 579 | 609 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 941 | 969 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1024 | 1047 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 863 | 881 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 915 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 609 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 860 | 976 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_015625166.1 | E3 ubiquitin-protein ligase UPL3 [Oryza sativa Japonica Group] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CD16 | HECT-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_038898 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology