Basic Information
Locus ID:
Oco02G032230
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 34246295 | 34249476 | + | Oco02G032230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 51,623.84 Da | 54.02 | 76.23 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 174 | 450 | 2.97539E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 325 | 365 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 414 | 450 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 320 | 4.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 152 | 451 | 3.3E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 146 | 454 | 6.3E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 153 | 194 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 320 | 2.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 411 | 450 | 1.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 197 | 237 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 277 | 3.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 365 | 5.3E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 418 | 451 | 11.81377 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 288 | 320 | 10.943775 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 418 | 451 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 288 | 329 | 13.917108 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 437 | 451 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 157 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_006646738.2 | protein FIZZY-RELATED 3 [Oryza brachyantha] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1F9W6 | WD_REPEATS_REGION domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_018872 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology