Basic Information
Locus ID:
Oco02G032210
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 34218416 | 34222793 | + | Oco02G032210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 40,454.85 Da | 81.30 | 66.30 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 169 | 210 | 2.85773E-22 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 254 | 357 | 8.5E-36 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 9 | 43 | 1.1E-14 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 168 | 210 | 1.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 222 | 8.39E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 216 | 2.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 169 | 209 | 6.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 169 | 210 | 12.445019 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 314 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_020186507.1 | probable E3 ubiquitin-protein ligase RHC2A [Aegilops tauschii subsp. strangulata] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1F9L9 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_018869 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology