Basic Information
Locus ID:
Oco02G031210
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
CW-type Zinc Finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 33417382 | 33422848 | + | Oco02G031210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 145,737.47 Da | 48.72 | 84.48 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1122 | 1227 | 6.40727E-26 | - |
| CDD | cd16449 | RING-HC | 983 | 1007 | 5.34811E-4 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 677 | 861 | 3.57824E-52 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 285 | 902 | 5.3E-114 | IPR000330 |
| Pfam | PF07496 | CW-type Zinc Finger | 507 | 550 | 5.7E-13 | IPR011124 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1121 | 1217 | 6.2E-8 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 685 | 857 | 2.25E-22 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 761 | 1245 | 1.72E-34 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 972 | 1021 | 6.62E-5 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 271 | 364 | 1.27E-6 | IPR027417 |
| SUPERFAMILY | SSF81383 | F-box domain | 237 | 273 | 6.54E-6 | IPR036047 |
| Gene3D | G3DSA:3.40.50.10810 | - | 674 | 864 | 3.7E-25 | IPR038718 |
| Gene3D | G3DSA:3.30.40.100 | - | 499 | 555 | 3.7E-15 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 1054 | 1284 | 2.0E-29 | IPR027417 |
| SMART | SM00487 | ultradead3 | 278 | 824 | 1.1E-10 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1135 | 1217 | 9.1E-7 | IPR001650 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 234 | 286 | 9.947874 | IPR001810 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 655 | 820 | 10.56567 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1111 | 1252 | 10.155392 | IPR001650 |
| ProSiteProfiles | PS51050 | Zinc finger CW-type profile. | 502 | 553 | 13.224275 | IPR011124 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 998 | 1007 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 445 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54460.1 | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein. | 0 |
| RefSeq | XP_006646686.1 | F-box protein At3g54460 [Oryza brachyantha] | 0 |
| Q9M1I1 | F-box protein At3g54460 OS=Arabidopsis thaliana OX=3702 GN=At3g54460 PE=2 SV=1 | 0 | |
| TrEMBL | J3L7W7 | F-box protein OS=Oryza brachyantha OX=4533 GN=102710658 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1541 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17169 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032391 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g041480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29962, Sbi_jg43425 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18477 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004235 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66254, Sgl70570 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014745, gene:ENSEOMG00000020728 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0004420, CQ.Regalona.r1.2BG0005620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165940 |
| Apiaceae | Apium graveolens | 3 | Ag11G04173, Ag7G01712, Ag8G01535 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G002180 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701638 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G08566 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010067m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07960.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g065390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0876 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0889 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g09600 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0022s00035.v1.0, Dusal.0193s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g17190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1984 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014812 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02355 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4531, BH02.4584, CH02.4635 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0046780 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0320710.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_058087 |
| Poaceae | Oryza coarctata | 2 | Oco01G030060, Oco02G031210 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G403500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403035 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G000930, Chr05G033740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G794500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG069780, gene_TRIDC3BG078800 |
| Poaceae | Triticum aestivum | 2 | TraesCS3B02G543900.1, TraesCS3D02G490000.1 |
| Poaceae | Zea mays | 2 | Zm00001eb140810_P001, Zm00001eb140820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10822 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9386 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG10.383, evm.TU.LG17.379, evm.TU.LG25.65 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g21150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.57 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7154 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13637 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14504, nbisL1-mrna-14505 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.345 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010191 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-243 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22075 |
| Salicaceae | Populus euphratica | 1 | populus_peu35074 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615369 |
| Solanaceae | Solanum chilense | 1 | SOLCI001589500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004568 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14390 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3892 |
| Zosteraceae | Zostera marina | 1 | Zosma02g16880.v3.1 |