Basic Information
Locus ID:
Oco02G030920
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 33134825 | 33139097 | - | Oco02G030920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 44,668.82 Da | 34.65 | 95.15 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 86 | 349 | 2.1E-84 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 85 | 335 | 3.96E-41 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 113 | 410 | 4.2E-92 | IPR027417 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 25 | 5.0 | - |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 283 | 354 | 16.369215 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 114 | 272 | 29.954317 | IPR020588 |
| PRINTS | PR00142 | RecA protein signature | 291 | 319 | 1.0E-47 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 325 | 354 | 1.0E-47 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 378 | 395 | 1.0E-47 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 205 | 234 | 1.0E-47 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 172 | 201 | 1.0E-47 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 243 | 272 | 1.0E-47 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_015641866.1 | DNA repair protein recA homolog 2, mitochondrial [Oryza sativa Japonica Group] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1EQA9 | DNA repair protein recA homolog 2, mitochondrial OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_027403 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology