Basic Information
Locus ID:
Oco02G030490
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 32686623 | 32691066 | - | Oco02G030490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 47,993.51 Da | 45.59 | 76.55 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 340 | 0.073 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 263 | 291 | 0.18 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 90 | 422 | 5.65E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 92 | 425 | 7.8E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 381 | 420 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 209 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 299 | 340 | 0.28 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 296 | 9.8E-4 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 68 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_015692773.2 | autophagy-related protein 18a [Oryza brachyantha] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0FYE9 | WD_REPEATS_REGION domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology