halophFGD

Basic Information

Locus ID: Oco02G029640

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG02	31951938	31959768	-	Oco02G029640

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.58	89,431.22 Da	52.54	89.59	-0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd08771	DLP_1	44	317	1.64611E-147	IPR001401
Pfam	PF01031	Dynamin central region	240	524	1.9E-100	IPR000375
Pfam	PF00350	Dynamin family	49	229	6.7E-57	IPR045063
Pfam	PF02212	Dynamin GTPase effector domain	655	744	2.0E-26	IPR003130
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	23	326	3.37E-83	IPR027417
Gene3D	G3DSA:1.20.120.1240	Dynamin, middle domain	348	558	1.9E-62	-
Gene3D	G3DSA:1.20.120.1240	Dynamin, middle domain	600	725	6.6E-20	-
Gene3D	G3DSA:3.40.50.300	-	22	327	4.5E-122	IPR027417
SMART	SM00053	dynamin_3	21	268	4.1E-124	IPR001401
SMART	SM00302	GED_2	654	745	6.2E-33	IPR003130
ProSiteProfiles	PS51718	Dynamin-type guanine nucleotide-binding (G) domain profile.	43	317	63.900116	IPR030381
ProSiteProfiles	PS51388	GED domain profile.	659	750	28.646561	IPR020850
ProSitePatterns	PS00410	Dynamin-type guanine nucleotide-binding (G) domain signature.	72	81	-	IPR019762
PRINTS	PR00195	Dynamin signature	241	260	2.1E-56	IPR022812
PRINTS	PR00195	Dynamin signature	71	88	2.1E-56	IPR022812
PRINTS	PR00195	Dynamin signature	149	166	2.1E-56	IPR022812
PRINTS	PR00195	Dynamin signature	46	64	2.1E-56	IPR022812
PRINTS	PR00195	Dynamin signature	199	217	2.1E-56	IPR022812
PRINTS	PR00195	Dynamin signature	218	234	2.1E-56	IPR022812
MobiDBLite	mobidb-lite	consensus disorder prediction	532	566	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	538	554	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	773	811	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	768	811	-	-

Gene Ontology

Molecular Function:

GO:0003924 (GTPase activity) GO:0005525 (GTP binding)

KEGG Pathway

KO Term:

K17065 (dynamin 1-like protein [EC:3.6.5.5])

Pathway:

ko04139 (Mitophagy - yeast) map04139 (Mitophagy - yeast) ko04214 (Apoptosis - fly) map04214 (Apoptosis - fly) map04217 (Necroptosis) map04621 (NOD-like receptor signaling pathway) map04668 (TNF signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G33650.1	dynamin-related protein 3A. Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B.
RefSeq	XP_006645242.1	dynamin-related protein 3B-like isoform X1 [Oryza brachyantha]
Swiss-Prot	Q8S944	Dynamin-related protein 3A OS=Arabidopsis thaliana OX=3702 GN=DRP3A PE=1 SV=2
TrEMBL	J3L778	Dynamin-related protein 3A OS=Oryza brachyantha OX=4533 GN=102705964 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg26358, jg30167
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24151, gene_26319
Amaranthaceae	Atriplex hortensis	2	Ah009339, Ah027217
Amaranthaceae	Beta vulgaris	2	BVRB_6g134060, BVRB_9g221380
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg10780, Sbi_jg12603, Sbi_jg47519, Sbi_jg53336
Amaranthaceae	Salicornia europaea	2	Seu_jg21769, Seu_jg8587
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00010427, GOSA_00018715
Amaranthaceae	Suaeda glauca	6	Sgl33658, Sgl38970, Sgl65549, Sgl65619, Sgl69872, Sgl69915
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000001447, gene:ENSEOMG00000002501 ... gene:ENSEOMG00000012044, gene:ENSEOMG00000014604, gene:ENSEOMG00000026037, gene:ENSEOMG00000027209, gene:ENSEOMG00000037045, gene:ENSEOMG00000050661
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.6AG0023190, CQ.Regalona.r1.6BG0024510 ... CQ.Regalona.r1.7BG0001270, CQ.Regalona.r1.9AG0023200
Anacardiaceae	Pistacia vera	2	pistato.v30102360, pistato.v30251260
Apiaceae	Apium graveolens	4	Ag1G00670, Ag1G00671, Ag1G00675, Ag9G00267
Arecaceae	Cocos nucifera	3	COCNU_02G008760, COCNU_11G003050, COCNU_15G004760
Arecaceae	Phoenix dactylifera	2	gene-LOC103710572, gene-LOC103716152
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.448.V1.1, AsparagusV1_09.959.V1.1 ... AsparagusV1_10.496.V1.1
Asteraceae	Flaveria trinervia	1	FtriNA23159
Brassicaceae	Arabidopsis thaliana	2	AT2G14120.3, AT4G33650.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10022566m.g.v1.0, Thhalv10024438m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g27480.v2.2, Sp7g31380.v2.2
Brassicaceae	Brassica nigra	3	BniB02g086410.2N, BniB03g009360.2N, BniB05g004450.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq03G2849, Ceq04G2497, Ceq04G2498, Ceq04G2499, Ceq09G0567
Casuarinaceae	Casuarina glauca	4	Cgl04G2725, Cgl04G2726, Cgl07G2100, Cgl09G0593
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g07420, gene.Cymno11g05250
Dunaliellaceae	Dunaliella salina	1	Dusal.0633s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g11470, gene.Thate04g10470
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-3893
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.566, evm.TU.LG05.766
Plantaginaceae	Plantago ovata	3	Pov_00002165, Pov_00028749, Pov_00039734
Plumbaginaceae	Limonium bicolor	3	Lb3G18220, Lb4G21985, Lb8G35668
Poaceae	Echinochloa crus-galli	6	AH02.4334, AH09.771, BH02.4362, BH09.781, CH01.5311 ... CH02.4411
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0044610, gene-QOZ80_1BG0094610 ... gene-QOZ80_4AG0320830, gene-QOZ80_4BG0352210, gene-QOZ80_8BG0669540
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0161510.1, HORVU.MOREX.r3.3HG0310450.1
Poaceae	Lolium multiflorum	1	gene-QYE76_043560
Poaceae	Oryza coarctata	3	Oco01G028550, Oco02G029640, Oco08G003980
Poaceae	Oryza sativa	2	LOC_Os01g69130.1, LOC_Os04g31190.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G383000, gene-BS78_06G063700
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0303048, Pt_Chr0405907, Pt_Chr0600531, Pt_Chr0600539
Poaceae	Sporobolus alterniflorus	8	Chr02G002460, Chr03G022880, Chr05G031980, Chr08G019150 ... Chr23G015110, Chr25G012840, Chr26G004720, Chr30G012560
Poaceae	Thinopyrum elongatum	2	Tel2E01G503500, Tel3E01G680400
Poaceae	Triticum dicoccoides	3	gene_TRIDC2AG040650, gene_TRIDC2BG043660 ... gene_TRIDC3AG060590
Poaceae	Triticum aestivum	7	TraesCS2A02G281000.2, TraesCS2B02G298400.1 ... TraesCS2D02G279900.2, TraesCS3A02G428000.2, TraesCS3B02G465100.3, TraesCS3D02G423500.1, TraesCS5D02G082000.4
Poaceae	Zea mays	3	Zm00001eb085760_P005, Zm00001eb143240_P003 ... Zm00001eb364470_P001
Poaceae	Zoysia japonica	3	nbis-gene-10988, nbis-gene-28339, nbis-gene-7907
Poaceae	Zoysia macrostachya	3	Zma_g11820, Zma_g21141, Zma_g9270
Portulacaceae	Portulaca oleracea	4	evm.TU.LG05.298, evm.TU.LG08.1072, evm.TU.LG22.813 ... evm.TU.LG25.1014
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g13580, gene.Posoc04g11250
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_1_RagTag.1949, evm.TU.Scaffold_2_RagTag.487
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-5737
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-13629, nbisL1-mrna-2044
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-3576, nbisL1-mrna-9691
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.671, evm.TU.utg000016l.305
Rhizophoraceae	Kandelia obovata	1	Maker00016490
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-2595, nbisL1-mrna-4867
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-13892, nbisL1-mrna-16562
Salicaceae	Populus euphratica	3	populus_peu22701, populus_peu24131, populus_peu37408
Solanaceae	Lycium barbarum	4	gene-LOC132598854, gene-LOC132609453, gene-LOC132609454 ... gene-LOC132643694
Solanaceae	Solanum chilense	4	SOLCI001249400, SOLCI004859400, SOLCI005038700 ... SOLCI007418400
Solanaceae	Solanum pennellii	3	gene-LOC107004619, gene-LOC107008072, gene-LOC107028925
Tamaricaceae	Reaumuria soongarica	5	STRG.20553_chr08_+, gene_12630, gene_16220, gene_2841 ... gene_9203
Tamaricaceae	Tamarix chinensis	4	TC10G0591, TC10G0596, TC11G0658, TC12G0612
Zosteraceae	Zostera marina	2	Zosma03g06250.v3.1, Zosma06g10030.v3.1