Basic Information
Locus ID:
Oco02G029510
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 31837994 | 31840348 | - | Oco02G029510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 10,871.11 Da | 50.92 | 65.15 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 18 | 91 | 1.21979E-49 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 20 | 90 | 2.8E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4 | 97 | 8.43E-29 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 18 | 96 | 1.4E-39 | - |
| SMART | SM00213 | ubq_7 | 20 | 91 | 4.5E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 18 | 95 | 15.927915 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | NP_001393040.1 | small ubiquitin-related modifier 1 [Oryza sativa Japonica Group] | 0 |
| P55857 | Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DVS4 | Small ubiquitin-related modifier OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_007594 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology