Basic Information
Locus ID:
Oco02G028650
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 31165760 | 31172605 | - | Oco02G028650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 162,089.73 Da | 40.63 | 107.28 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1198 | 1418 | 4.37027E-118 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 585 | 791 | 4.79631E-99 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 885 | 1175 | 4.22867E-74 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 270 | 555 | 2.38863E-90 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 612 | 743 | 5.9E-16 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1217 | 1365 | 1.2E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 884 | 1123 | 1.6E-23 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 269 | 534 | 1.4E-20 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 261 | 560 | 5.1E-29 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 611 | 805 | 2.66E-50 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 884 | 1182 | 5.23E-47 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1191 | 1425 | 1.55E-64 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 855 | 1181 | 1.1E-53 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1183 | 1437 | 1.7E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 233 | 568 | 1.8E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 599 | 840 | 4.5E-67 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1226 | 1411 | 3.7E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 617 | 799 | 8.3E-14 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 886 | 1163 | 34.734776 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 591 | 814 | 20.728409 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1200 | 1434 | 17.400427 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 270 | 547 | 30.192331 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 716 | 730 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_015616248.1 | putative ABC transporter C family member 15 [Oryza sativa Japonica Group] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0JSC9 | ABC transporter C family member 15 OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology