Basic Information
Locus ID:
Oco02G028580
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 31131235 | 31135808 | - | Oco02G028580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 45,491.42 Da | 40.84 | 90.43 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 62 | 325 | 4.4E-118 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 63 | 325 | 1.16E-55 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 330 | 383 | 6.41E-7 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 89 | 390 | 3.4E-108 | IPR027417 |
| SMART | SM00382 | AAA_5 | 112 | 286 | 5.7E-7 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 59 | 381 | 1.9E-135 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 259 | 330 | 25.454229 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 90 | 249 | 38.243553 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 271 | 279 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 220 | 249 | 3.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 182 | 211 | 3.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 268 | 296 | 3.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 301 | 330 | 3.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 148 | 177 | 3.1E-76 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 355 | 372 | 3.1E-76 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 59 | 387 | 43.067917 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 423 | - | - |
| Coils | Coil | Coil | 359 | 386 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_006645183.1 | DNA repair protein recA homolog 3, mitochondrial [Oryza brachyantha] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0JSB3 | DNA repair protein recA homolog 3, mitochondrial OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology