Basic Information
Locus ID:
Oco02G028150
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 30756010 | 30762078 | + | Oco02G028150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 118,480.98 Da | 60.80 | 66.64 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 172 | 222 | 3.75088E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 329 | 374 | 1.5E-8 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 241 | 307 | 3.5E-13 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 169 | 253 | 9.96E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 314 | 8.64E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 326 | 375 | 6.56E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 167 | 255 | 9.2E-15 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 303 | 561 | 6.9E-65 | - |
| SMART | SM00647 | ibrneu5 | 316 | 374 | 0.004 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 241 | 307 | 2.2E-19 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 172 | 218 | 8.978064 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 168 | 378 | 42.180672 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1032 | 1057 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1032 | 1065 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - | - |
| Coils | Coil | Coil | 1002 | 1037 | - | - |
| Coils | Coil | Coil | 412 | 432 | - | - |
| Coils | Coil | Coil | 935 | 962 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_039776505.1 | uncharacterized protein LOC120644036 isoform X1 [Panicum virgatum] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1E5UZJ1 | Putative E3 ubiquitin-protein ligase ARI7 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0020692 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology