Basic Information
Locus ID:
Oco02G026660
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 29415701 | 29416915 | - | Oco02G026660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 43,393.71 Da | 46.19 | 106.29 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 12 | 55 | 4.62459E-19 | - |
| Pfam | PF04564 | U-box domain | 8 | 78 | 1.9E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 78 | 2.28E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 109 | 381 | 6.91E-17 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 220 | 381 | 9.1E-11 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 99 | 217 | 3.6E-5 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 87 | 6.1E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 11 | 76 | 1.4E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 7 | 83 | 35.729549 | IPR003613 |
| Coils | Coil | Coil | 116 | 136 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_015619864.1 | E3 ubiquitin-protein ligase PUB23 [Oryza sativa Japonica Group] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1E2C6 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_029025 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology