Basic Information
Locus ID:
Oco02G026610
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 29376014 | 29382064 | - | Oco02G026610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 103,941.59 Da | 50.83 | 73.54 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08215 | STKc_Nek | 7 | 262 | 6.60144E-130 | - |
| Pfam | PF00069 | Protein kinase domain | 8 | 262 | 1.8E-64 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 4 | 321 | 2.56E-83 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 90 | 333 | 2.7E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 87 | 2.0E-23 | - |
| SMART | SM00220 | serkin_6 | 8 | 262 | 3.1E-83 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 8 | 262 | 46.15247 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 129 | 141 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 14 | 37 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 611 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 422 | - | - |
| Coils | Coil | Coil | 488 | 508 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44200.1 | NIMA (never in mitosis, gene A)-related 6. Encodes AtNek5, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.Interacts physically with plant kinesins ARK1 and ARK2. Mutants show defects in root epidermal cell morphology, trichome branching and other epidermal cell abnormalities suggesting a rol e in epidermal cell differentiation. NEK6 co-localizes with cortical microtubules. | 0 |
| RefSeq | XP_015621069.1 | serine/threonine-protein kinase Nek5 isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q94CU5 | Serine/threonine-protein kinase Nek5 OS=Oryza sativa subsp. japonica OX=39947 GN=NEK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1E2D6 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_029032 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology