Basic Information
Locus ID:
Oco02G026230
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 29036000 | 29043427 | - | Oco02G026230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 81,494.22 Da | 44.16 | 87.15 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 548 | 592 | 1.1E-8 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 273 | 383 | 2.1E-7 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 530 | 593 | 8.57E-13 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 656 | 731 | 2.15E-11 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 154 | 409 | 4.13E-22 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 526 | 597 | 3.0E-8 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 152 | 414 | 1.5E-27 | IPR023214 |
| SMART | SM00577 | forpap2 | 216 | 392 | 6.5E-10 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 656 | 722 | 0.0029 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 529 | 593 | 4.6E-6 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 157 | 405 | 16.882923 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 648 | 723 | 10.897223 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 528 | 594 | 11.504129 | IPR014720 |
| Coils | Coil | Coil | 575 | 595 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_015620281.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X3 [Oryza sativa Japonica Group] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0E0JR81 | protein-serine/threonine phosphatase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology