Basic Information
Locus ID:
Oco02G025890
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 28579602 | 28583096 | - | Oco02G025890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 26,202.61 Da | 49.70 | 66.65 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 126 | 178 | 2.15097E-10 | - |
| Pfam | PF12906 | RING-variant domain | 126 | 177 | 6.0E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 180 | 2.01E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 181 | 1.9E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 125 | 178 | 1.9E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 118 | 184 | 16.931753 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 60 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_015694193.2 | uncharacterized protein LOC102715912 [Oryza brachyantha] | 0 |
| TrEMBL | A0A8J5VTQ7 | RING-CH-type domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0001g29955 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology