halophFGD

Basic Information

Locus ID: Oco02G025500

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Short Name: MYB3R-5

Description: Myb-like DNA-binding domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG02	28218630	28222182	+	Oco02G025500

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.39	27,190.92 Da	25.39	97.06	0.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00311	TIM	6	247	4.71042E-116	IPR000652
Pfam	PF00121	Triosephosphate isomerase	7	246	3.7E-86	IPR000652
SUPERFAMILY	SSF51351	Triosephosphate isomerase (TIM)	3	247	2.88E-92	IPR035990
Gene3D	G3DSA:3.20.20.70	Aldolase class I	1	254	2.0E-114	IPR013785
TIGRFAM	TIGR00419	tim: triose-phosphate isomerase	7	241	4.0E-90	IPR000652
ProSiteProfiles	PS51440	Triosephosphate isomerase (TIM) family profile.	5	248	81.274399	IPR000652
ProSitePatterns	PS00171	Triosephosphate isomerase active site.	165	175	-	IPR020861
Hamap	MF_00147_B	Triosephosphate isomerase [tpiA].	4	248	57.580345	IPR022896

Gene Ontology

Biological Process:

GO:0006096 (glycolytic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0004807 (triose-phosphate isomerase activity)

KEGG Pathway

KO Term:

K09422 (transcription factor MYB, plant)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G55440.1	triosephosphate isomerase. Encodes triosephosphate isomerase.
RefSeq	XP_006644990.1	triosephosphate isomerase, cytosolic-like [Oryza brachyantha]
Swiss-Prot	P48494	Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica OX=39947 GN=TPI PE=1 SV=3
TrEMBL	J3L5Q2	Triosephosphate isomerase, cytosolic OS=Oryza brachyantha OX=4533 GN=102704015 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg14328, jg30336
Aizoaceae	Mesembryanthemum crystallinum	3	gene_16565, gene_21873, gene_5887
Amaranthaceae	Atriplex hortensis	3	Ah009729, Ah028026, Ah035393
Amaranthaceae	Beta vulgaris	3	BVRB_2g024780, BVRB_7g173820, BVRB_9g214650
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg12142, Sbi_jg1756, Sbi_jg21196, Sbi_jg22607 ... Sbi_jg34777, Sbi_jg47081
Amaranthaceae	Salicornia europaea	3	Seu_jg16499, Seu_jg21365, Seu_jg2995
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003202, GOSA_00016309, GOSA_00020375
Amaranthaceae	Suaeda glauca	8	Sgl55393, Sgl61514, Sgl62583, Sgl62584, Sgl67130, Sgl67131 ... Sgl73032, Sgl76571
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000008065, gene:ENSEOMG00000015257 ... gene:ENSEOMG00000017657, gene:ENSEOMG00000017727, gene:ENSEOMG00000037647, gene:ENSEOMG00000039704, gene:ENSEOMG00000042274, gene:ENSEOMG00000050891, gene:ENSEOMG00000051222
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1BG0018340, CQ.Regalona.r1.2AG0020160 ... CQ.Regalona.r1.7AG0002880, CQ.Regalona.r1.7BG0003400, CQ.Regalona.r1.9AG0021180, CQ.Regalona.r1.9BG0002810
Anacardiaceae	Pistacia vera	4	pistato.v30060310, pistato.v30112630, pistato.v30175580 ... pistato.v30260440
Apiaceae	Apium graveolens	2	Ag10G01159, Ag7G01176
Arecaceae	Cocos nucifera	4	COCNU_04G016000, COCNU_08G008510, COCNU_09G003860 ... COCNU_16G007990
Arecaceae	Phoenix dactylifera	5	gene-LOC103703497, gene-LOC103706349, gene-LOC103714060 ... gene-LOC103716485, gene-LOC103721989
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.340.V1.1, AsparagusV1_07.186.V1.1 ... AsparagusV1_08.3523.V1.1
Asteraceae	Flaveria trinervia	3	Ftri17G30823, Ftri5G14170, Ftri9G31588
Brassicaceae	Arabidopsis thaliana	2	AT2G21170.1, AT3G55440.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000249m.g.v1.0, Thhalv10010654m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp4g00320.v2.2, Sp5g07030.v2.2
Brassicaceae	Brassica nigra	5	BniB01g023000.2N, BniB02g016830.2N, BniB06g056790.2N ... BniB06g064890.2N, BniB08g069850.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G1119, Ceq07G1654, Ceq08G2169
Casuarinaceae	Casuarina glauca	4	Cgl02G1161, Cgl07G1789, Cgl07G1790, Cgl08G2323
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g09790, gene.Cymno18g00270
Dunaliellaceae	Dunaliella salina	1	Dusal.0384s00014.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g07840, gene.Thate07g13920, gene.Thate08g12900
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-3996
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.1736, evm.TU.LG08.262, evm.TU.LG09.1264
Plantaginaceae	Plantago ovata	2	Pov_00001507, Pov_00040117
Plumbaginaceae	Limonium bicolor	5	Lb3G16295, Lb3G16298, Lb7G33336, Lb7G33341, Lb8G35714
Poaceae	Echinochloa crus-galli	9	AH02.3836, AH02.672, AH03.2735, BH02.3849, BH02.675 ... BH03.2879, BH07.4158, CH02.774, CH03.3084
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0009680, gene-QOZ80_1AG0039470 ... gene-QOZ80_1BG0058280, gene-QOZ80_1BG0089500, gene-QOZ80_6AG0528200, gene-QOZ80_6BG0482200
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0230590.1, HORVU.MOREX.r3.5HG0499580.1
Poaceae	Lolium multiflorum	5	gene-QYE76_018031, gene-QYE76_037520, gene-QYE76_048572 ... gene-QYE76_056277, gene-QYE76_062318
Poaceae	Oryza coarctata	5	Oco01G001900, Oco01G024610, Oco02G001890, Oco02G025500 ... Oco18G010390
Poaceae	Oryza sativa	3	LOC_Os01g05490.1, LOC_Os01g62420.1, LOC_Os09g36450.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G255100, gene-BS78_03G065300 ... gene-BS78_03G331800
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0205837, Pt_Chr0700034
Poaceae	Sporobolus alterniflorus	11	Chr02G004970, Chr02G023510, Chr03G004300, Chr03G019890 ... Chr05G014390, Chr08G000840, Chr08G022270, Chr10G014150, Chr11G008120, Chr14G010190, Chr21G010340
Poaceae	Thinopyrum elongatum	3	Tel3E01G133200, Tel3E01G575900, Tel5E01G515200
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG008640, gene_TRIDC3AG051670 ... gene_TRIDC3BG011880, gene_TRIDC3BG058380, gene_TRIDC5AG047950, gene_TRIDC5BG051750
Poaceae	Triticum aestivum	8	TraesCS3A02G073300.1, TraesCS3A02G359400.1 ... TraesCS3B02G087400.1, TraesCS3B02G392000.1, TraesCS3D02G073000.1, TraesCS5A02G324200.1, TraesCS5B02G324800.1, TraesCS5D02G331100.1
Poaceae	Zea mays	5	Zm00001eb103580_P001, Zm00001eb124410_P001 ... Zm00001eb319770_P001, Zm00001eb335870_P001, Zm00001eb367890_P001
Poaceae	Zoysia japonica	7	nbis-gene-11451, nbis-gene-13020, nbis-gene-13249 ... nbis-gene-35258, nbis-gene-49551, nbis-gene-49552, nbis-gene-6953
Poaceae	Zoysia macrostachya	4	Zma_g30000, Zma_g32199, Zma_g7601, Zma_g9966
Portulacaceae	Portulaca oleracea	6	evm.TU.LG05.884, evm.TU.LG08.1190, evm.TU.LG19.865 ... evm.TU.LG22.946, evm.TU.LG24.862, evm.TU.LG25.448
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g12890, gene.Posoc07g15270
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_12_RagTag.248, evm.TU.Scaffold_2_RagTag.126
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-14030, nbisL1-mrna-24554, nbisL1-mrna-5085 ... nbisL1-mrna-6008
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10421, nbisL1-mrna-11027, nbisL1-mrna-16903 ... nbisL1-mrna-19651
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16216, nbisL1-mrna-19527, nbisL1-mrna-3358 ... nbisL1-mrna-9383
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000009l.1159, evm.TU.utg000016l.160 ... evm.TU.utg000027l.421
Rhizophoraceae	Kandelia obovata	3	Maker00005525, Maker00016822, Maker00018038
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14148, nbisL1-mrna-5566
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-11753, nbisL1-mrna-14105, nbisL1-mrna-21122
Salicaceae	Populus euphratica	6	populus_peu02123, populus_peu06437, populus_peu08761 ... populus_peu20279, populus_peu35671, populus_peu36595
Solanaceae	Lycium barbarum	4	gene-LOC132599285, gene-LOC132605872, gene-LOC132606616 ... gene-LOC132614384
Solanaceae	Solanum chilense	4	SOLCI003901100, SOLCI004472500, SOLCI005290200 ... SOLCI007478500
Solanaceae	Solanum pennellii	4	gene-LOC107002393, gene-LOC107007743, gene-LOC107017928 ... gene-LOC107021278
Tamaricaceae	Reaumuria soongarica	3	gene_11393, gene_11790, gene_8368
Tamaricaceae	Tamarix chinensis	4	TC05G1764, TC08G0768, TC11G2132, TC12G0709
Zosteraceae	Zostera marina	4	Zosma02g18770.v3.1, Zosma03g20670.v3.1, Zosma06g14860.v3.1 ... Zosma06g29310.v3.1