Basic Information
Locus ID:
Oco02G024860
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
CPK13
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 27760867 | 27768886 | + | Oco02G024860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 60,602.43 Da | 39.79 | 83.55 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 69 | 327 | 8.49757E-136 | - |
| Pfam | PF13499 | EF-hand domain pair | 374 | 434 | 7.5E-10 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 70 | 328 | 3.1E-74 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 446 | 509 | 6.8E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 356 | 534 | 3.8E-46 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 68 | 335 | 4.32E-85 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 156 | 336 | 1.2E-61 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 337 | 512 | 5.1E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 71 | 155 | 2.9E-24 | - |
| SMART | SM00054 | efh_1 | 411 | 439 | 0.81 | IPR002048 |
| SMART | SM00220 | serkin_6 | 70 | 328 | 3.1E-97 | IPR000719 |
| SMART | SM00054 | efh_1 | 483 | 511 | 5.9E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 375 | 403 | 1.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 447 | 475 | 2.5E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 407 | 442 | 8.209045 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 479 | 514 | 14.597092 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 371 | 406 | 15.852385 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 70 | 328 | 47.014645 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 443 | 478 | 14.987627 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 492 | 504 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 384 | 396 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 456 | 468 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 190 | 202 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 76 | 99 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_006646451.2 | calcium-dependent protein kinase 3 [Oryza brachyantha] | 0 |
| Q8LPZ7 | Calcium-dependent protein kinase 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1BI50 | Calcium-dependent protein kinase 30 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002233 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology