Basic Information
Locus ID:
Oco02G023950
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 26909256 | 26910133 | + | Oco02G023950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 16,311.51 Da | 37.59 | 102.14 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 40 | 144 | 1.1E-21 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 144 | 2.16E-42 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 37 | 9.3E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 38 | 145 | 6.2E-36 | - |
| SMART | SM00219 | tyrkin_6 | 1 | 145 | 1.1E-4 | IPR020635 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 145 | 21.827856 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 68 | 80 | - | IPR008271 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79620.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_042427562.1 | leucine-rich repeat receptor protein kinase HPCA1-like isoform X2 [Zingiber officinale] | 0 |
| Q9LT96 | Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana OX=3702 GN=At5g49770 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9A2C2 | Protein kinase domain-containing protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza coarctata | 2 | Oco02G023950, Oco02G023970 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-11608, nbis-gene-12261, nbis-gene-3395 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g05690, gene.Posoc02g05730 |