Basic Information
Locus ID:
Oco02G023840
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the cysteine synthase cystathionine beta- synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 26797543 | 26800473 | - | Oco02G023840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 37,309.69 Da | 43.44 | 99.83 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01561 | CBS_like | 74 | 332 | 1.88991E-78 | - |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | 133 | 298 | 3.8E-22 | IPR001926 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 65 | 336 | 7.2E-57 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 186 | 332 | 2.2E-51 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 131 | 185 | 2.2E-51 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 72 | 99 | 7.1E-22 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 100 | 127 | 7.1E-22 | IPR036052 |
| ProSitePatterns | PS00901 | Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. | 95 | 113 | - | IPR001216 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00270 (Cysteine and methionine metabolism)
map00270 (Cysteine and methionine metabolism)
ko00920 (Sulfur metabolism)
map00920 (Sulfur metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03630.1 | cysteine synthase 26. Encodes a protein that possesses S-sulfocysteine synthase activity and lacks O-acetylserien(thiol)lyase activity. | 0 |
| RefSeq | XP_006644896.1 | cysteine synthase-like [Oryza brachyantha] | 0 |
| O22682 | S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent), chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CS26 PE=1 SV=1 | 0 | |
| TrEMBL | J3L570 | Cysteine synthase OS=Oryza brachyantha OX=4533 GN=102700846 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology