Basic Information
Locus ID:
Oco02G023190
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 26271372 | 26274520 | + | Oco02G023190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 36,665.38 Da | 68.50 | 57.20 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 192 | 233 | 1.18852E-22 | - |
| Pfam | PF14369 | zinc-ribbon | 6 | 36 | 6.8E-10 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 191 | 233 | 5.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 239 | 1.46E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 239 | 8.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 192 | 232 | 2.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 192 | 233 | 11.95817 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_052161590.1 | probable E3 ubiquitin-protein ligase RHC1A [Oryza glaberrima] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | Q5VQY5 | RING-type E3 ubiquitin transferase OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0802000 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology