Basic Information
Locus ID:
Oco02G022470
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 25529851 | 25532556 | - | Oco02G022470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 55,120.62 Da | 47.27 | 89.68 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 27 | 132 | 7.4E-7 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 120 | 364 | 1.1E-77 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 13 | 117 | 4.08E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 14 | 159 | 7.9E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 136 | 8.6E-4 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 100 | 11.192007 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 88 | 388 | 75.625145 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 453 | - | - |
| Coils | Coil | Coil | 450 | 470 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_040384483.1 | BTB/POZ domain-containing protein At5g03250-like [Oryza brachyantha] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0JPJ0 | BTB/POZ domain-containing protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology