Basic Information
Locus ID:
Oco02G022430
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 25470219 | 25479694 | - | Oco02G022430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 145,046.31 Da | 53.84 | 72.80 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 559 | 886 | 2.78097E-85 | - |
| CDD | cd18793 | SF2_C_SNF | 1138 | 1247 | 5.62829E-53 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 576 | 964 | 2.6E-68 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 1002 | 1039 | 1.5E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1136 | 1237 | 4.2E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 543 | 886 | 4.29E-44 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1001 | 1047 | 6.65E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 895 | 1263 | 6.17E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 901 | 1290 | 1.3E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 651 | 742 | 9.8E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 995 | 1052 | 2.4E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 532 | 622 | 3.6E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 762 | 899 | 3.0E-29 | IPR038718 |
| SMART | SM00487 | ultradead3 | 555 | 853 | 5.6E-26 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1154 | 1237 | 1.2E-18 | IPR001650 |
| SMART | SM00184 | ring_2 | 1002 | 1040 | 5.1E-4 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 574 | 848 | 12.005484 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1130 | 1291 | 13.516487 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1002 | 1041 | 10.645153 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1017 | 1026 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 734 | 783 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 738 | 752 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 409 | - | - |
| Coils | Coil | Coil | 1293 | 1295 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_015616228.1 | helicase-like transcription factor CHR28 isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DXK9 | Helicase-like transcription factor CHR28 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_016942 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology