Basic Information
Locus ID:
Oco02G022290
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
CT11-RanBPM
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 25309459 | 25313491 | - | Oco02G022290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 62,217.00 Da | 37.22 | 70.97 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 416 | 542 | 4.03686E-42 | IPR033734 |
| CDD | cd09612 | Jacalin | 227 | 356 | 4.97501E-38 | IPR033734 |
| CDD | cd09612 | Jacalin | 48 | 125 | 1.34213E-29 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 45 | 125 | 2.5E-20 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 413 | 542 | 4.4E-27 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 227 | 356 | 2.7E-27 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 212 | 356 | 1.44E-39 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 44 | 124 | 2.49E-26 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 400 | 542 | 1.44E-38 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 15 | 125 | 8.7E-30 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 205 | 356 | 3.6E-47 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 396 | 542 | 1.4E-48 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 227 | 358 | 6.1E-37 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 413 | 543 | 4.2E-36 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 13 | 126 | 7.3E-10 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 216 | 358 | 46.940834 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 402 | 543 | 47.906895 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 1 | 126 | 29.720625 | IPR001229 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 153 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.2 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_040380369.1 | jacalin-related lectin 3 [Oryza brachyantha] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1DYC3 | Jacalin-related lectin 3 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_016910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology