Basic Information
Locus ID:
Oco02G022160
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 25149741 | 25169115 | + | Oco02G022160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 129,542.24 Da | 41.45 | 80.70 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 51 | 172 | 1.27384E-30 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 190 | 516 | 1.21253E-152 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 879 | 1086 | 3.0E-45 | IPR029346 |
| Pfam | PF00917 | MATH domain | 56 | 174 | 9.8E-16 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 617 | 869 | 2.9E-75 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 192 | 513 | 8.1E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 187 | 543 | 1.82E-94 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 47 | 181 | 2.45E-36 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 189 | 517 | 1.0E-88 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 678 | 794 | 1.2E-40 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 795 | 892 | 2.2E-22 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 46 | 188 | 1.7E-46 | IPR008974 |
| SMART | SM00061 | math_3 | 51 | 153 | 2.1E-14 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 49 | 172 | 33.610374 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 192 | 516 | 39.030365 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 432 | 449 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 193 | 208 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_015612854.1 | ubiquitin carboxyl-terminal hydrolase 13 [Oryza sativa Japonica Group] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1E313 | ubiquitinyl hydrolase 1 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_028458 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology