Basic Information
Locus ID:
Oco02G021750
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 24782753 | 24784352 | - | Oco02G021750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 23,791.72 Da | 48.45 | 75.20 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 26 | 70 | 5.50145E-29 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 28 | 68 | 1.5E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 24 | 81 | 2.5E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 19 | 82 | 1.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 28 | 68 | 1.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 28 | 69 | 13.492482 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 43 | 52 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 115 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006644765.1 | E3 ubiquitin-protein ligase RNF5-like isoform X1 [Oryza brachyantha] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DEC1 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002984 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology