Basic Information
Locus ID:
Oco02G020140
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 23296788 | 23300461 | + | Oco02G020140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 91,115.67 Da | 40.66 | 63.81 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 531 | 556 | 8.5E-6 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 694 | 813 | 3.7E-37 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 603 | 627 | 0.38 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 430 | 563 | 8.0E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 570 | 667 | 1.2E-9 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 531 | 559 | 1.1E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 528 | 562 | 10.610596 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 313 | - | - |
| Coils | Coil | Coil | 679 | 699 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25580.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_006644673.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Oryza brachyantha] | 0 |
| Q680H3 | Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H75 PE=2 SV=2 | 0 | |
| TrEMBL | J3L3V5 | DYW_deaminase domain-containing protein OS=Oryza brachyantha OX=4533 GN=102705672 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology