Basic Information
Locus ID:
Oco02G019610
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 22814653 | 22820751 | + | Oco02G019610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 87,727.57 Da | 56.97 | 74.74 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 487 | 790 | 9.14272E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 656 | 689 | 0.13 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 573 | 605 | 4.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 483 | 790 | 1.83E-51 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 46 | 259 | 6.49E-13 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 458 | 794 | 3.5E-120 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 45 | 262 | 1.1E-18 | - |
| SMART | SM00320 | WD40_4 | 523 | 562 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 753 | 792 | 3.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 565 | 605 | 8.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 698 | 737 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 651 | 689 | 5.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 512 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 608 | 647 | 5.2E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 658 | 691 | 9.836508 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 572 | 607 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 572 | 614 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 658 | 698 | 11.978851 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 252 | 9.587812 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 592 | 606 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 676 | 690 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 549 | 563 | 5.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 676 | 690 | 5.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 592 | 606 | 5.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| Coils | Coil | Coil | 255 | 275 | - | - |
| Coils | Coil | Coil | 293 | 313 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_006646280.2 | protein SPA1-RELATED 4 [Oryza brachyantha] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | I1NRD4 | Protein kinase domain-containing protein OS=Oryza glaberrima OX=4538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology