Basic Information
Locus ID:
Oco02G019340
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 22541968 | 22547454 | - | Oco02G019340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 34,157.03 Da | 48.10 | 71.89 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 60 | 141 | 3.5E-19 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 243 | 299 | 2.8E-20 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 195 | 238 | 4.8E-8 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 132 | 189 | 3.79E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 195 | 243 | 1.47E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 57 | 131 | 3.92E-16 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 179 | 267 | 3.2E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 268 | 301 | 1.3E-18 | - |
| SMART | SM00184 | ring_2 | 196 | 238 | 2.9E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 53 | 129 | 25.25791 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 131 | 195 | 33.834389 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 196 | 239 | 11.928664 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25560.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_015611800.1 | probable E3 ubiquitin-protein ligase RZFP34 [Oryza sativa Japonica Group] | 0 |
| Q5JL96 | Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0JNB9 | CHY-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology