Basic Information
Locus ID:
Oco02G015830
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 18849580 | 18851289 | - | Oco02G015830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 63,015.57 Da | 43.28 | 87.80 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01466 | vWA_C3HC4_type | 65 | 221 | 7.11197E-58 | - |
| Pfam | PF00092 | von Willebrand factor type A domain | 66 | 226 | 2.0E-21 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 402 | 468 | 4.3E-12 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 62 | 235 | 4.87E-29 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 66 | 235 | 2.5E-35 | IPR036465 |
| SMART | SM00327 | VWA_4 | 64 | 238 | 3.8E-20 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 66 | 237 | 17.314674 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 501 | - | - |
| Coils | Coil | Coil | 375 | 398 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08050.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_052165237.1 | E3 ubiquitin-protein ligase WAV3-like [Oryza glaberrima] | 0 |
| TrEMBL | A0A0E0JLL5 | VWFA domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology