Basic Information
Locus ID:
Oco02G015240
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
ATPase family associated with various cellular activities (AAA)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 18246102 | 18248723 | + | Oco02G015240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 67,421.55 Da | 37.89 | 85.28 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 288 | 421 | 1.83442E-16 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 290 | 420 | 1.0E-36 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 445 | 478 | 8.2E-8 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 250 | 487 | 2.16E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 249 | 421 | 8.1E-89 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 422 | 501 | 8.1E-89 | - |
| SMART | SM00382 | AAA_5 | 286 | 423 | 3.3E-19 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 393 | 412 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 550 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 550 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 499 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_040384454.1 | uncharacterized protein LOC102714962 [Oryza brachyantha] | 0 |
| Q7ZZ25 | Outer mitochondrial transmembrane helix translocase OS=Danio rerio OX=7955 GN=atad1a PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1EGH5 | AAA domain-containing protein (Fragment) OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_006389 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology