Basic Information
Locus ID:
Oco02G014710
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
response to stimulus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 17658436 | 17665230 | + | Oco02G014710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.12 | 137,689.78 Da | 78.14 | 66.00 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06943 | LSD1 zinc finger | 1267 | 1291 | 2.5E-10 | IPR005735 |
| Pfam | PF06943 | LSD1 zinc finger | 1229 | 1253 | 4.0E-8 | IPR005735 |
| TIGRFAM | TIGR01053 | LSD1: zinc finger domain, LSD1 subclass | 1226 | 1256 | 8.2E-12 | IPR005735 |
| TIGRFAM | TIGR01053 | LSD1: zinc finger domain, LSD1 subclass | 1265 | 1292 | 5.0E-8 | IPR005735 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1302 | 1321 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 770 | 789 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1151 | 1201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1117 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 524 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 381 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006644363.3 | mucin-17-like isoform X1 [Oryza brachyantha] | 0 |
| Q704V3 | Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1 | 0 | |
| TrEMBL | J3L1U6 | Nascent polypeptide-associated complex subunit alpha OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24879 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22243 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018025 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g183230 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg26103, Sbi_jg51831, Sbi_jg9944 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18783 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017034 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45921, Sgl50621 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000011905, gene:ENSEOMG00000032799 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0005240, CQ.Regalona.r1.8BG0005350 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30088690 |
| Apiaceae | Apium graveolens | 1 | Ag8G00921 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G002500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696358 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2019.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G14234 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G21610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026412m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g19740.v2.2 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2293 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2597 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g13580 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g18780 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.960 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005619 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23726, Lb4G24771 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0024290, gene-QOZ80_1BG0074980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0271290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053759 |
| Poaceae | Oryza coarctata | 2 | Oco01G014430, Oco02G014710 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G193500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603313 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G015570, Chr05G018250 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G376800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG032870, gene_TRIDC3BG037360 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G219500.1.cds1, TraesCS3B02G250000.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb161950_P005 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29262 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8206 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g11280 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.850 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14120 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21585 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.124 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006277 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10632 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21918 |
| Salicaceae | Populus euphratica | 1 | populus_peu10068 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621203 |
| Solanaceae | Solanum chilense | 1 | SOLCI005462700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008945 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16702 |
| Zosteraceae | Zostera marina | 2 | Zosma01g23600.v3.1, Zosma01g30140.v3.1 |