Basic Information
Locus ID:
Oco02G014600
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 17560148 | 17567358 | - | Oco02G014600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 36,580.34 Da | 43.62 | 100.46 | 0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 77 | 123 | 8.57618E-16 | - |
| Pfam | PF12906 | RING-variant domain | 82 | 122 | 4.3E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 81 | 127 | 5.3E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 136 | 3.2E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 75 | 123 | 9.7E-13 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 65 | 129 | 16.595446 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_052144222.1 | uncharacterized protein LOC127763527 [Oryza glaberrima] | 0 |
| TrEMBL | A0A6G1CEX0 | RING-CH-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_008184 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology